Scientific Program

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Scientific Talks Session I

 

1.         Quantifiable Real-Time 3D Ultrasound Data Acquisition and Visualization

Jacqueline Nerney Welch, Jeremy A. Johnson, Michael R. Bax, Samuel K. S. So, Thomas M. Krummel and Ramin Shahidi

 

2.         Stochastic Roadmap Simulation: Efficient Representation and Algorithms for the Analysis of Molecular Motion

Serkan Apaydin, Carlos Guestrin, David Hsu, Douglas Brutlag and Jean-Claude Latomb

 

3.         Automated Creation of Radiology Teaching Modules: Demonstration of PACS Integration, Conversion and Distribution

Bhargav Raman, Raghav Raman, Lalithakala Raman, Yaseen Samara, Danny Lau, Garry Gold and Chris Beaulieu

 

4.         Modeling Biological Processes Using Workflow and Petri Net Models

Mor Peleg, Iwei Yeh and Russ Altman

 

5.         Effect of Release of Flexor Pollicis Longus’ A1 Pulley on the Muscle's Thumb-tip Force:  a Computer Simulation

Joseph Towles, Wendy Murray and Felix Zajac

 

6.         Quantitative Structural Analysis Methods for Electron Microscope Tomography

Mark L. Harlow, David Ress, Robert M. Marshall and U. J. McMahan

 

Scientific Talks Session II

1.         SNPs And Protein Function:  Structural Modeling of Disease Associated Mutation

Sean Mooney and Teri E. Klein

 

2.         A Fast and Robust Approach for Deformable Modeling in Surgery Simulation

Matthias Teschner and Sabine Girod

 

3.         Using Surface Envelopes in 3D Structure Modeling

Jonathan M. Dugan, Glenn A. Williams and Russ B. Altman

 

4.         Computer-Assisted Beam Orientation Selection for IMRT

Andrei B. Pugachev and Lei Xing

 

5.         Microarray Cluster Evaluation: Easy as 1-2-3

Joshua M Stuart, Laura C. Lazzeroni, Art B. Owen, Moni Kiraly, James Lund and Stuart K. Kim

 

6.         Computer Aided Detection of Lung Nodules and Colonic Polyps from Volumetric CT Images

David S. Paik, Geoffrey D. Rubin, Christopher F. Beaulieu, Judy Yee, R. Brooke Jeffrey, Jr., Curtis H. Coulam, David Naidich and Sandy Napel

 

Poster Session

01        Surveillance Systems in Biological Sciences

Shuo Liu, Teri E. Klein and Russ B. Altman

 

02        Biocomputation of Technical Skills Performance

Chantal L. Rawn, Carla M. Pugh, Wm. LeRoy Heinrichs and Thomas M. Krummel

 

03        Information Gain and Loss in 4 Prostate Cancer Microarray Research  

Zhenbin Fan

 

04        The Efficacy and Accuracy of Two-Dimensional Virtual Fluoroscopic Navigation in Intradiscal Procedure           

Yung C. Chen and Sang-heon Lee

 

05        Statistical Evaluation of Brain Wave Recognition of Sentences   

Dik Kin Wong, Marcos Perreau Guimaraes and Patrick Suppes

 

06        Curvature Color Shading of Aorta and Its Branches          

Haobo Xu

 

07        Lexical Methods Increase Precision in Finding Gene/Drug Relationships           

Jeffrey Chang and Russ Altman

 

08        Modeling Liver Motion and Deformation During the Respiratory Cycle Using Intensity-Based Free-Form Registration of Gated MR Images

Rohlfing T, Maurer CR, O'Dell WG and Zhong J

 

09        Frame-Based Representation of Biological Experimental Data and Its Applications           

Mike Bada, Michelle Whirl Carrillo and Russ Altman

 

10        Relative Motion of the Rectus Femoris and Vastus Intermedius During Knee Extension       

Deanna Asakawa, Silvia Blemker, Garry Gold and Scott Delp

 

11        Mechanobiology of Developmental Dysplasia of the Hip  

Sandra J. Shefelbine and Dennis R. Carter

 

12        Fast Brain Flattening

Alex Wade, Robert F. Dougherty and Brian A. Wandell

 

13        Computational Investigation of the Biomechanical Response of the Cornea to Lamellar Procedures

F.A. Guarnieri, P.M. Pinsky and J. Shimmick

 

14        Medial Axis Registration of Supine and Prone CT Colonography Data

Ping Li, Burak Acar, Sandy Napel, David S. Paik, Judy Yee R., Brooke Jeffrey, Jr. and Christopher F. Beaulieu

 

15        Evaluation of Soft-Tissue Model Parameters         

Matthias Teschner and Sabine Girod

 

16        Analysis of Biochemical Proximity Experiments:  The Ribosome Case

Michelle Whirl Carillo, Irene S. Gabashvili, Mike Bada, D. Rey Banatao and Russ B. Altman

 

17        Of Screensavers and Proteins: Simulating Folding of Beta Hairpin Using Distributed Computing     

Bojan Zagrovic, Eric Sorin and Vijay Pande

 

18        Generation of Traveling Waves of Myxococcus Xanthus Cells

Welch RD, Igoshin O, Oster G and Kaiser D

 

19        Simulations of a Designed Beta-Beta-Alpha Fold  

Christopher D. Snow and Vijay S. Pande

 

20        GABRIEL: a Machine Learning System for the Analysis of DNA Microarrays and Other Genetic Datasets

Kuang-Hung Pan, Chih Jian Lih and Stanley N. Cohen

 

21        Modeling Molecular Function and Failure: Misreading of Genetic Code by the Ribosome

Irene S. Gabashvili, Mor Peleg and Russ B. Altman

 

22        Efficient Incremental Collision Detection for Large Molecular Models   

Itay Lotan and Fabian Schwarzer

 

23        Thoroughly Searching Sequence Space: Large-Scale Protein Design of Structural Ensembles

Stefan M. Larson, Jeremy L. England, John R. Desjarlais and Vijay S. Pande

 

24        Regulatory Networks Revealed by Transcriptional Profiling in the Yeast           

Wei Wang, J Michael Cherry, Hao Li and David Botstein

 

25        Small Libraries of Protein Fragments Accurately Model Native Protein Structures           

Rachel Kolodny, Patrice Koehl, Leo Guibas and Michael Levitt

 

26        Identification of Clinically Relevant Genes in Lung Tumor Expression Data

Olga G. Troyanskaya, Mitchell E. Garber, Russ B. Altman and David Botstein

 

27        Automated Functional Annotation of Protein Structures

Mike Hsin-Ping Liang, Russ B. Altman and Doug L. Brutlag

 

28        How Does Soleus Strength Affect Gait Characteristics?

Jill S. Higginson, Richard R.. Neptune, Felix E. Zajac and Steve A. Kautz

 

29        Automated Aortic Flow-channel Segmentation: Method and Comparison with Manual Segmentation

Feng Zhuge, Sandy Napel, Smadar Shiffman and Geoffrey D. Rubin

 

30        Move to a Cure         

Lorenzo Torresani, Danny B. Yang, Eugene J. Alexander, Christoph Bregler and Helen Bronte-Stewart

 

31        An Automated Method to Quantify Air Trapping in Obstructive Pulmonary Disease

Zhu June Hongyun, Michael L Goris and Terry E. Robinson

 

32        Mechanobiology of Soft Skeletal Tissue Regeneration: A Mathematical Approach for Describing Material Property Changes During Soft Skeletal Tissue Formation

Loboa Polefka EG, Wren TAL, Beaupré GS and Carter DR

 

33        Medical Imaging Using Capacitive Micromachined Ultrasonic Transducer Arrays

Jeremy Johnson, Ömer Oralkan, Utkan Demirci, Sanli Ergun, Mustafa Karaman and Pierre Khuri-Yakub

 

34        An Advanced Visualization Tool for Gene Expression

Tuan Pham, Amit Kaushal, Eran Segal, Nir Friedman and Daphne Koller

 

35        Semi-Automatic Identification of Retinotopic Visual Areas

R.F. Dougherty, V.M. Koch, A.R.. Wade, B. Fischer and B.A. Wandell

 

36        Progenetix.net: Storage and Visualization of Genomic Aberration Data in Human Malignancies as Starting Point for Data Mining Procedures        

Michael Baudis

 

37        Correction of Motion Artifacts in Three-Dimensional CT-DSA Using Constrained Adaptive Multi-Level Free-Form Registration       

Rohlfing T and Maurer CR

 

38        Genome Intersection Analysis: A New Means of Identifying Biological Pathways

Theodor Hanekamp, Iwei Yeh and Russ Altman

 

39        Curved Thin Slab Maximum Intensity Projections (CTS-MIP): Method and Evaluation for CT Angiography

Raghav Raman, Sandy Napel and Geoffrey D. Rubin

 

40        Wavelet Censoring for Statistical Analyses of Brain Waves         

Marcos Perreau Guimaraes, Patrick Suppes and Dik Kin Wong

 

41        Handheld Access to Radiology Teaching Files: An Automated System for Format Conversion and Content Creation

Lalithakala Raman, Raghav Raman, Bhargav Raman, Yaseen Samara, Danny Lau, Garry Gold and Chris Beaulieu

 

42        An Interactive Approach To Individualizing Generic Medical Decision Models

George C. Scott and Ross D. Shachter

 

43        SKOLAR Cards - Mobile Access to Hiqh Quality Clinical Information   

Jeremy C. Durack, Todd Grappone, Scott Kush and Al Nevarez

 

44        Using Binning to Maintain Confidentiality in Pharmacogenomic Databases

Zhen Lin, Michael Hewett and Russ Altman

 


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