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HOMEPAGE | Contact Information |
Subject-Specific Finite Element Modeling of Three-Dimensional Pulsatile Flow in the Human Abdominal Aorta: Comparison of Resting and Simulated Exercise Conditions
Beverly T. Tang, Christopher P. Cheng, Mary T. Draney, Philip S. Tsao
and Charles A. Taylor
Probabilistic Consistency-Based Multiple Sequence Alignment
Chuong B. Do, Michael Brudno and Serafim Batzoglou
Fast, Intensity-Based 2D-3D Registration of Clinical Spine Data Using Light Fields
Daniel B. Russakoff, Torsten Rohlfing, John R. Adler, Jr. Ramin
Shahidi and Calvin R. Maurer, Jr.
The Cancer Module Map: Combinatorial Organization of Cancer Revealed By The Unification of Genomic Data
Eran Segal, Nir Friedman, Aviv Regev and Daphne Koller
A Literature Based Expression Data Information Extraction Tool
Nipun Mehra, Soumya Raychaudhuri and Russ Altman
Computational Assessment of a Single-Molecule-Detection Approach for Sequencing-By-Hybridization
Alexandros Pertsinidis and Steve Chu
3D Modeling of Complex Muscle Geometry
Silvia S. Blemker and Scott L. Delp
Genome-Wide Codon Bias Is Set By Mutational Processes
Swaine Chen, William Lee, Alison K. Hottes and Harley H.
McAdams
Predicting the Activity of Transcription Factor Binding Motifs
Yueyi Liu, X. Shirley Liu, Josh M. Stuart, Stuart K. Kim and Serafim Batzoglou
A 3D Statistical Classification Scheme for Computer Aided Detection of Colonic Polyps in CTC
Ping Li, Christopher F. Beaulieu, David S. Paik, R.B. Jeffrey, Jr. and Sandy Napel
Beyond the Human Genome: Automated Functional Annotation of Variation Data
Sean Mooney and Russ Altman
The Virtual Spine: Haptic Epidural Simulator
Samuel Glassenberg and Raymond Glassenberg
P01 Unfolding of Proteins: Thermal and Mechanical Unfolding
Joe S. Hur and Eric Darve
P02 Functional and Computational Analysis of Suites of Coregulated Genes in Ciona savignyi
David Scott Johnson and Arend Sidow
P03 Differential Gene Expression Among Naïve, Memory, and Effector Human T Lymphocytes
Michael Asmar, Peter Lee and Susan Holmes
P04 Understanding Beta Hairpin Folding: The Tryptophan Zippers
Christopher Davis Snow and Vijay S. Pande
P05 Optimizing the Detection of Evolutionarily Constrained Regions in Proteins
Jonathan Binkley, Eric A. Stone and Arend Sidow
P06 Computational Bioinorganic Chemistry: Interaction of Non-Heme Iron Enzymes with Dioxgyen
Andrea Decker and Edward I. Solomon
P07 Contextual UMLS® Indexing to Improve the Precision of Concept-Based Representation in XML-Structured Clinical Radiology Reports
Yang Huang, Henry J. Lowe and William R. Hersh
P08 Waves and Outflow Boundary Conditions for One-Dimensional Finite Element Modeling of Blood Flow and Pressure in Arteries
Irene Vignon and Charles A. Taylor
P09 Coupled MD-Finite Element Modeling of Transdermal Drug Delivery
Jee Eun Rim, Peter M. Pinsky and William W. van Osdol
P10 Whole Genome Haplotype Alignment of Ciona savignyi
Kerrin Small and Arend Sidow
P11 Brain Wave Recognition of Emotions in EEG
Elliot Berkman, Dik Kin Wong, Marcos Perreau Guimaraes, E. Timothy Uy, James Gross and Patrick Suppes
P12 Monte Carlo Simulation of Folding Processes for 2D Linkages
Leo Guibas, Rachel Kolodny, Michael Levitt and Ileana Streinu
P13 Visualizing Biological Networks through Selective Reduction and Force Direction
Adam Wright
P14 Protein-Protein Interactions in Poliovirus
Andres Bayani Tellez, Scott Crowder, Serkan Apaydin, Doug Brutlag and Karla Kirkegaard
P15 Multi-Hand Haptic Interaction to Simulate Complex Surgical Procedures
Christopher Sewell, Kenneth Salisbury, Sabine Girod, Tom Krummel and Jean-Claude Latombe
P16 Comparing Housekeeping and Tissue-Specific Gene Promoters: An Analysis of Spurious Transcription Factor Binding Sites
Diane Irene Schroeder and Rick Myers
P17 Three-Dimensional Measurements and Analysis of the Isolated Malleus-Incus Complex
Jae Hoon Sim, Sunil Puria and Charles R. Steele
P18 Image-Based Analytic Surface Representation and Mesh Generation
Erik Jan Bekkers and Charles A. Taylor
P19 An Automatic Lung Segmentation Scheme for Computer-Aided Detection
Shaohua Sun, Geoffrey D. Rubin and Sandy Napel
P20 Simulation by Reaction Path Annealing: Protein Misfolding and Aggregation in a 7 residue peptide from the Yeast Prion Protein Sup35
Jan Lipfert, Joel Franklin, Fang Wu and Sebastian Doniach
P21 Analysis of Nucleotide Diversity in Exonic Splicing Enhancers (ESEs) of Human Membrane Transporter Genes
Bernie Daigle, Jr., Maya K. Leabman, Kathleen M. Giacomini and Russ B. Altman
P22 Predicting HIV Drug Resistance Using Supervised Machine Learning Methods
Jaideep Srinivas Ravela, Asa Ben-Hur and Robert W. Shafer
P23 Robust Neural Decoding of Reaching Movements for Prosthetic Systems
Caleb Kemere, Maneesh Sahani and Teresa Meng
P24 Nanorobots As Cellular Assistants in Inflammatory Responses
Aranzazu Casal, Arancha Casal, Tad Hogg and Adriano Cavalcanti
P25 Predicting Functional Sites on Protein Structures with SeqFEATURE
Mike Hsin-Ping Liang, Russ B Altman and Doug L Brutlag
P26 Comparing Conservation and Covariance in Protein Alignments
Anthony Austin Fodor and Richard W. Aldrich
P27 Three-Dimensional Mapping of the Water Structure Around Hydrophobic Solutes
Tanya M. Raschke and Michael Levitt
P28 Genome-Wide Discovery of Transcriptional Modules from DNA Sequence and Gene Expression
Eran Segal, Roman Yelensky and Daphne Koller
P29 Walking Along Chromosomes: Genomic Mapping of Cytogenetic Aberrations from Tumor Databases
Michael Baudis
P30 A Performance-Based Multi-Classifier Approach to Atlas-Based Segmentation
Torsten Rohlfing, Daniel B. Russakoff and Calvin R. Maurer, Jr.
P31 DNA Stacking Interactions of Fluorinated Aromatic C-Deoxyribonucleosides
Jacob S. Lai and Eric T. Kool
P32 Large Scale Study of Protein Domain Distribution in the Context of Alternative Splicing
Shuo Liu and Russ B. Altman
P33 Real-Time Lens Distortion Correction Using Texture Mapping
Michael R. Bax
P34 Conservation of Known Regulatory Elements and Their Identification using Comparative Genomics
Yueyi Irene Liu, X. Shirley Liu, Liping Wei, Russ B. Altman and Serafim Batzoglou
P35 Image-Based Modeling of Blood Flow in Pulmonary Arteries Using a One-Dimensional Finite Element Method Coupled to a Morphometry-Based Model of the Distal Vessels
Ryan L. Spilker, David Parker, Jeffrey A. Feinstein and Charles A. Taylor
P36 Calcium Quantification in the Aortoiliac Arteries: Interscan Variability of Agatson Scoring vs. Automated Mass Quantification in Noncontrast and Contrast-Enhanced Scans
Bhargav Raman, Raghav Raman, Mercedes Carnethon, Stephen P. Fortmann, Sandy Napel and Geoffrey D. Rubin
P37 Morphological Differences in Thoracic Aortic Aneurysms when Compared to Normal Aortas: A Comparative Study in 49 Patients
Raghav Raman, Zhao Shaohung, Bhargav Raman, Sandy Napel and Geoffrey D. Rubin
P38 2D/3D Registration for Image Guidance in Interventional Radiology
Joyoni Dey, Markus Kukuk and Sandy Napel
P39 Independent Component Analysis (ICA) for Removing Ballistocardiogram and Ocular Artifacts from EEG Data Acquired Inside an MRI Scanner
Gaurav Srivastava, Vinod Menon, Sonia Crottaz-Herbette and Gary H. Glover
P40 Inferring Motifs That Mediate Protein Interactions
Haidong Wang, Eran Segal, Asa Ben-Hur, Douglas Brutlag and Daphne Koller
P41 Community Based Approach To Microarray Research
Brian Howard Null and QuangQiu Wang
P42 Probabilistic Discovery of Overlapping Cellular Processes and Their Regulation
Alexis Battle, Eran Segal and Daphne Koller