Biomedical Computation at Stanford (BCATS)

Poster Session I (Packard Lobby, 12:30 - 1:30pm)

0 Alex Pang Computer Simulation of Venous Occlusion Induced by Pacing Leads
2 Brett T Kawakami Quantum Chemistry Studies of SN2 Reactivity for Environmentally Relevant Halogenated Compounds
4 Cesar A Rodriguez Quantitative Model of the Protein Reporter Complementation Assay
6 Christopher M Sewell Training the Cognitive and Stylistic Aspects of Surgery Through Simulation
8 David W Parker A 3D Model of Myosin V Structure
10 Diane I Schroeder Functional Analysis of a Sequence in the Human β-globin Locus Control Region with a High Potential for Stress-induced Duplex Destabilization
12 Eugene V Davydov A Computational Model for RNA Multiple Structural Alignment
14 Girish S Mulye Comparing Human White Matter Structure Using Diffusion Tensor Imaging and Tensor Map Deformations
16 Joyoni Dey 2D/3D Registration Using Mutual Information for Image Guidance in Interventional Radiology
18 Jared D Starman Removing Truncation Artifacts from C-Arm CT Reconstructions via a 0th and 1st Moment Estimation and Extrapolation Technique
20 Alexandre S Kretchetov Topological Partners for Low-resolution 3D Electron Density Models of Biomolecules Reconstructed from SAXS Data
22 Lilach Hadany The Genetic Cost of Adaptation and the Evolution of Recombination
24 Lillian T Chong Dimerization of the p53 Oligomerization Domain: Identification of a Folding Nucleus by Molecular Dynamics Simulations
26 Maureen E Hillenmeyer Chemogenomic Profiling of Small Molecules in Yeast
28 Michael R Shirts Directly Calculated Ligand Binding Free Energies Using Folding@Home
30 Nikesh Kotecha An Eigenface Based Approach to Classify Cell-signaling Profiles
32 Paul L Briant Towards Understanding the Initiation and Progression of Knee Osteoarthritis
34 Rashmi Raghu Viscoelastic Arterial Wall Model for One-dimensional Blood Flow
36 Sam M Pearlman SAFA: High-Throughput Semi-Automated Nucleic Acid Footprinting Analysis Quantification Software
38 Brian R Thorndyke Compensation for Respiratory Motion Artefacts in PET/CT Image Registration: A Hybrid Optimization Method
40 Anca Velisar Development of a Dynamic Musculoskeletal Model of the Upper Extremity: Inertial and Visco-Elastic Properties
42 Sheng Zhao Novel Algorithm for Quantifying Real-time Polymerase Chain Reactions Based on Reaction Kinetics
44 Yen L Chia Temporal Genomic Profiling Guided by MRI in a Murine Model

Poster Session II (Packard Lobby, 4:30 - 5:30pm)

1 Andrea S Les A Comparative Study of Hemodynamic Conditions in Normal and Aneurismal Mouse, Rat, and Human Adbominal Aortas
3 Caroline E Moore-Kochlacs AllCyc: Predicting the Metabolic Pathways of All Sequenced Organisms
5 Daniel S Morris A Collaborative Virtual Environment for the Simulation of Temporal Bone Surgery
7 Christopher D Snow Extracting Millisecond Protein Dynamics from Molecular Dynamics Simulations
9 David E Milov CPOE: An Enterprise View
11 Sridhar Devarajan Chaotic Activity of Basal Ganglia Drives Exploration in a Neural Model Based on Reinforcement Learning
13 Geremy Heitz Automatic Generation of Statistical Shape Models Using Nonrigid Registration with a Single Segmented Template Mesh
15 Yang Huang ChartIndex - Automatic Encoding of Clinical Documents Using Controlled Vocabularies
17 Jee E Rim Multiscale Computational Modeling of Transdermal Drug Delivery
19 Hyun J Kim One-dimensional Finite Element Simulation of Blood Flow and Pressure Waves for Spinal Cord Injury Patients
21 Katherine R S Holzbaur A Model of the Upper Extremity for Simulating Musculoskeletal Surgery and Analyzing Neuromuscular Control
23 Jan Lipfert Predicting 11-Repeat, Right Handed Coiled Coils from Protein Sequences
25 Lucy K Southworth Probabilistic Gene Recommender for Expression Data
27 Michael J He Gene Expression Analysis Sheds Light on CD8 T Cell Differentiation
29 Michael Y Zhang Integrating Clinical and Genomic Data for Translational Studies in Cancer
31 Padmavathi Sundaram Selective Fold Removal for CT Colonography: A Physically Based Approach
33 Peter S Kim Post-Transplantation Dynamics of the Immune Response to Chronic Myelogenous Leukemia
35 Tejas R Subhashchandra Medial Axis Estimation of Occluded Peripheral Arterial Tree Segments Using a Knowledge-based Approach
37 Shaohua Sun A Simulated Annealing-Based Algorithm For Lung Nodule Registration In CT Scans
39 Varun K Gajendran Interactive Simulator for HIV Treatment Decisions
41 Irene E Vignon-Clementel Outflow Boundary Conditions for Three-dimensional Modeling of Blood Flow in Arteries.
43 Wael I Salloum Modelling the Behaviour of Klenow
45 Andres B Tellez Investigating the Mechanism of Protein-Primed RNA Replication in Poliovirus