Biomedical Computation at Stanford (BCATS)

Poster Session I (Packard Lobby, 10:00 - 11:00am)

Authors will be available at even numbered posters.

Poster Session II (Packard Lobby, 2:15 - 3:15pm)

Authors will be available at odd numbered posters.

Poster Listing

0 Adam J. Bernstein Evaluation of hemodynamic efficiency in a new "Y-graft" design for the Fontan operation
1 Chand T. John An algorithm for generating muscle-actuated simulations of long-duration movements
2 Edith M. Arnold A dynamic three-dimensional finite element model of the patellofemoral joint
3 Gilwoo Choi Quantification of radial compression and deflection of superficial femoral artery due to musculoskeletal motion
4 Ga Young Suh Three-dimensional analysis of respiratory motion of renal artery
5 Jennifer Hicks Evaluating the effect of a tibial torsion bone deformity on muscle function during gait
6 Kathryn Keenan Computation of cartilage material properties with an interpolant response surface
7 Jan Lipfert Low resolution 3-D models from small-angle X-ray scattering as input for Poisson-Boltzmann calculations
8 Peter Minary Novel sampling strategies in structural biocomputing
9 Andy Nnewihe Dependence of knee kinetics on inertial model of the shank during run-to-stop movements
10 Rachel Weinstein Impulse based PD control for joints and muscles
11 Xiling Shen Hybrid modeling and digital abstraction of the Caulobacter regulatory network
12 Yong-Jin Yoon Intracochlear pressure and derived quantities from a three-dimensional linear model
13 Arpit Aggarwal Lung nodule CAD false positive reduction using a novel shape analysis approach
14 Dana Paquin Multiscale deformable registration of medical images
15 Emilio Antunez Volume features for semi-rigid segmentation and registration of low-resolution electron density maps
16 Tejas Rakshe Error prediction and performance evaluation of eigenshape based algorithm for reconstructing missing segments vascular centerlines in CT angiography (CTA)
17 Rong Shi Transparent rendering of intraluminal contrast for 3D polyp visualization at CT colonography
18 Shradha Budhiraja Lung quantization of mice to analyze the behavior of oncogene inactivation on RAS/Myc tumors.
19 Amy V. Kapp Discovering and validating disease subtypes using microarray datasets
20 Byron C. Ellis Higher performance algorithms for learning signaling pathways using Bayesian networks
21 Bernie Daigle Use of a graphical model to integrate prior biological knowledge with microarray data
22 Daniel Holbert CBS+: A Protege-based tool for literature curation at PharmGKB
23 Eran Mukamel Independent component analysis for automatic separation of biological calcium dynamics from in vivo cerebellar imaging data
24 Jia-Ren Lin NetworkFinder, a weighted co-occurrence method to extract gene interaction and to construct biological network from Medline abstracts
25 Greg M. Goldgof CONTRAfold: RNA secondary structure prediction for single and multiple sequences without physics-based models
26 Jing Shi A confidence score calculator for evaluating the metabolic pathways predicted by PathoLogic
27 Lucy Southworth Identifying changes in transcriptional control during mouse aging
28 Maureen Hillenmeyer Chemogenomic profiling reveals gene and drug relationships in yeast
29 Megan So Predicting functional binding sites in proteins
30 Patrick Perry Latent covariate detection and verification
31 Rashmi Raj Multi-relational data mining of time-oriented biomedical databases
32 Debashis Sahoo Extracting binary signals from microarray time-course data
33 Adam Sadovsky Identifying relationships between gene co-evolution and metabolic function
34 Xing Chen Flux control in metabolic networks: optimality and robustness
35 Sam Pearlman Incorporating comparative genomics to improve phosphorylation prediction
36 Irene Liu Building a nosology based on disease etiology
37 Wenqi Shao Subtyping and detecting recombination in HIV sequences with Bayesian models and signature patterns
38 Rong Xu Automatic identification of pharmacogenomic literature using two-level text classification
39 Rong Xu Combining text classification and hidden Markov modeling techniques for structuring randomized clinical trial abstracts
40 David Goode Sequence variation and constraint in the human genome
41 Dariya Glazer Investigating 4-dimensional structure-based function prediction
42 Gaurav Chopra Protein denaturation in a nanodroplet
43 Xuhui Huang Exploring the folding free energy landscape of a helical peptide via serial replica exchange method
44 Jessica Ebert Recognizing complex ligand binding sites using multiple local structural models
45 Magda A. Jonikas Knowledge-informed coarse-grained modeling of RNA structure
46 Guanfeng Liu An efficient algorithm for computing conformations of protein loops
47 Ryo Shimizu mdMotif: de novo protein design using motif libraries
48 Sergio Moreno Structural properties of proteins in minimalist lattice models
49 Xiao Liu Conservation and divergence of yeast transcriptional networks
50 Takashi Kido Quality assessment of microarray data and optimal filtering criteria
51 David J. Carlson Effects of linear energy transfer (LET) on intrinsic radiation sensitivity - tests of the putative mechanisms underlying the cell killing effects of ionizing radiation
52 Mandy Koop Quantitative measures of finger, limb and postural movement velocities in very early stage, untreated Parkinson's disease
53 Peter S. Kim Dynamics and impact of the immune response to chronic myelogenous leukemia
54 Yael Garten Pharmspresso - A tool for semantic search in full-text articles to support curators and researchers
55 Gaurav Chopra Modeling hydrophobic collapse in aromatic rich short peptide segments using molecular dynamics