Biomedical Computation at Stanford (BCATS)

Scientific Talks Session I (TCSEQ 200)

9:00–9:15am Padmavathi Sundaram Colon polyp detection using smoothed shape operators
9:15–9:30am Gal Chechik Timed transcriptional control of metabolic transitions
9:30–9:45am Hyun Jin Kim Inflow boundary condition using a heart model for three-dimensional simulations of blood flow
9:45–10:00am Dana Paquin Multiscale deformable registration of medical images
Rachel Weinstein Impulse based PD control for joints and muscles
Xing Chen Flux control in metabolic networks: optimality and robustness
Yueyi Liu Building a nosology based on disease etiology

Scientific Talks Session II (TCSEQ 200)

1:15–1:30pm Anthony Sherbondy In vivo measurement of anisotropic tissue microstructure arrangement using most likely connections through diffusion imaging data
1:30–1:45pm Julia Chen Relationship between periosteal residual stresses and strains and specific growth rates during development of the chick embryo Tibiotarsus
1:45–2:00pm Ryan Tibshirani Automatic gating tools for the analysis of flow cytometry data
2:00–2:15pm Rashmi Raj Multi-relational data mining of time-oriented biomedical databases
David Carlson Effects of linear energy transfer (LET) on intrinsic radiation sensivity–tests of the putative mechanisms underlying the cell killing effects of ionizing radiation
Gilwoo Choi Quantification of radial compression and deflection of superficial femoral artery due to musculoskeletal motion
Gregory Goldgof CONTRAfold: RNA secondary structure prediction for single and multiple sequences without physics-based models

Scientific Talks Session III (TCSEQ 200)

3:15–3:30pm Peter Kasson Understanding membrane fusion through ensemble molecular dynamics simulation
3:30–3:45pm Evan Smith Efficient auditory coding
3:45–4:00pm Su-In Lee Identifying regulatory mechanisms associated with genetic variation
4:00–4:15pm Jeffrey Reinbolt Investigating stiff-knee gait with subject-specific simulations