Biomedical Computation at Stanford (BCATS)

BCATS 2007 Student Presentations

Scientific Talks Session I (Cubberley)

9:25–9:40am H. Jill Lin Predicting Cancer Genotype from Imaging
9:40–9:55am Darya S. Glazer Improving Protein Structure Prediction With Molecular Dynamics Simulations
9:55–10:05am Keyan Salari Integrated Genomic Analysis of DNA Copy Number and Gene Expression Patterns in Colorectal Cancer
Magdalena A. Jonikas Knowledge-Based Coarse-Grained Modeling of RNA Structure
Jonathan R. Karr Automated Methods for Mapping Cancer Cell Signaling Networks Using Flow Cytometry
Gilwoo Choi In Vivo Abdominal Aortic 3D Deformations Due to Musculoskeletal Motion
10:05am-10:20am Samuel Gross CONTRAST: A Discriminative, Phylogeny-free Approach to Multiple Informant De Novo Gene Prediction

Scientific Talks Session II (Cubberley)

11:15–11:30pm Katy Keenan Contact Analysis for Biphasic Model of Cartilage Indentation
11:30–11:45pm Sarah Kummerfeld The Molecular Phenotype of Aging

Scientific Talks Session III (Cubberley)

2:10–2:25pm Karen Sachs Learning Signaling Pathway Structures from Single Cell Measurements of Network Subsets
2:25–2:40pm Elhanan Borenstein Large-Scale Reconstruction and Phylogenetic Analysis of Metabolic Growth Environments
2:40–2:50pm Tejas Rakshe An Improved Algorithm for Femoropopliteal Artery Centerline Restoration Using Calcifications and Prior Knowledge of Shapes
Gaurav Krishnamurthy Quantification of In Vivo Mitral Valve Material Properties Using an Inverse Finite Element Analysis Methodology
Boyko Kakaradov Identifying Protein Complexes in Saccharomyces Cerevisiae
Chand T. John Rapid Generation of 3D Muscle-Driven Simulations of Human Walking
2:50pm-3:05pm Ajay Seth Are Constraints Necessary to Model Biological Joints?

Scientific Talks Session IV (Cubberley)

4:00–4:15pm Paula M. Petrone Gating Mechanisms in the Ribosome Exit Tunnel
4:15–4:30pm Balaji Srinivasan Automatic Generation of One Million Structured Digital Abstracts